java -cp TaggingSetChooser.jar;mail.jar -mx360M hk.hku.csis.biosphere.algorithm.TaggingSetChooser sim=hk.hku.csis.biosphere.similarityscore.SimilarityMatrix link=C threshold=0.8 data=data/chr2A_LD.data corr=data/chr2A_LD_processed.txt pos=data/chr2A_raw_processed.txt result=results/TaggingSetChooser.result.CompleteLink map=results/TaggingSetChooser.result.CompleteLink.html scale=1000 mem=results/TaggingSetChooser.result.CompleteLink.members > results/TaggingSetChooser.result.CompleteLink.out
java -cp TaggingSetChooser.jar;mail.jar -mx360M hk.hku.csis.biosphere.algorithm.TaggingSetChooser sim=hk.hku.csis.biosphere.similarityscore.MaxMinSimilarityMatrix threshold=0.8 data=data/chr2A_LD.data corr=data/chr2A_LD_processed.txt pos=data/chr2A_raw_processed.txt result=results/TaggingSetChooser.result.MaxMinLink map=results/TaggingSetChooser.result.MaxMinLink.html scale=1000 mem=results/TaggingSetChooser.result.MaxMinLink.members > results/TaggingSetChooser.result.MaxMinLink.out
java -cp TaggingSetChooser.jar;mail.jar hk.hku.csis.biosphere.algorithm.TaggingSetChooser2 threshold=0.8 data=data/chr2A_LD.data corr=data/chr2A_LD_processed.txt pos=data/chr2A_raw_processed.txt map=results/TaggingSetChooser.result.Greedy.html scale=1000 mem=results/TaggingSetChooser.result.Greedy.members > results/TaggingSetChooser.result.Greedy.out